The Energy and Resources Institute ( TERI ) Requires Fermentation Scientist- Sustainable Agriculture The Energy and Resources Institute ( TERI ) is seeking a highly skilled and motivated Fermentation Scientist (R&D) to join Sustainable Agriculture Programme. The ideal candidate will bring in-depth knowledge of microbiology, fermentation techniques, and downstream processing, and will contribute to ongoing research and development projects focused on microbial systems for sustainable agricultural solutions. Details are Provided below 1. Position Title: Fermentation Scientist (R&D) 2.Division : Sustainable Agriculture Programme 3. Location: TERI Gram, Gwal Pahadi 4. Key Responsibilities: -Manage the setup, operation, and maintenance of fermentation equipment including bioreactors, fermenters, and centrifuges. -Monitor and optimize key fermentation parameters (pH, temperature, oxygen levels, pressure, agitation, nutrients) to ensure optimal microbial growth ...
Ph. D. Position in Veterinary Microbiology at Faculty of Veterinary Medicine, University of Calgary- Master's degree (or equivalent experience) in Microbiology, Veterinary Sciences, Molecular Biology, Bioinformatics, or a related field
PhD Position in Veterinary Microbiology - Studying the Resistome of Bulk Tank Milk Using Nanopore Sequencing at Faculty of Veterinary Medicine, University of Calgary
Join a World-Class Research Team in Dairy Cattle Health & Antimicrobial Resistance
The Faculty of Veterinary Medicine at the University of Calgary is seeking a highly motivated PhD student to work on a cutting-edge project investigating the resistome of bulk tank milk (BTM) using long-read sequencing with Oxford Nanopore technology. This project will be part of a broader initiative aimed at developing an antimicrobial resistance (AMR) surveillance program for dairy farms, working closely with industry and research partners.
You will be joining an internationally recognized team of multi-disciplinary experts specializing in bovine mastitis, digital dermatitis, Johne's disease, antimicrobial resistance, bioinformatics, and metagenomics. The research group is at the forefront of genomics-driven surveillance of bacterial diseases in dairy cattle, and aim to translate advanced research into practical, actionable data for dairy producers.
Project Overview
Milk is a complex and challenging sample to work with, due to the low abundance of bacterial DNA, but it also holds rich and highly valuable information about the microbial communities and AMR genes present in dairy herds.
This project will focus on:
- Optimizing bacterial DNA extraction from BTM to maximize recovery of microbial DNA.
- Developing and refining sample preparation protocols for long-read sequencing using Oxford Nanopore technology.
-Performing metagenomic sequencing to identify Metagenome-Assembled Genomes (MAGS) that provide insight into bacterial species composition and AMR gene distribution.
-Applying bioinformatics tools to analyze resistome data, link AMR gene presence to farm antimicrobial use, and contribute to the development of a cost-effective BTM surveillance platform.
-This research has the potential to revolutionize dairy cattle disease surveillance, offering an affordable, rapid, and farm-level AMR monitoring tool that will directly benefit dairy producers.
Why Join ?
a. Work with a Prestigious, Multi-Disciplinary Research Team
-You will collaborate with leading experts in veterinary microbiology, genomics, bioinformatics, and epidemiology.
-You will be fully integrated into a vibrant and collaborative research environment with access to state-of-the-art sequencing technology and computational resources.
b. Innovative, Impact-Driven Research
- The findings from this project will be directly used to develop a practical AMR surveillance system for dairy farms, helping producers optimize antimicrobial use and improve herd health.
-You will contribute to publishing high-impact research articles and present findings at international conferences.
c Excellent Training & Career Development
-Advanced bioinformatics and molecular biology training, with hands-on experience in long-read sequencing, metagenomics, and machine learning-driven resistome analysis.
-Access to funding for conferences and travel.
-Integration into Canada's leading AMR and One Health research networks, enhancing career opportunities in academia, industry, and government research.
Who Should Apply?
Institute is looking for a passionate and self-driven student with:
- A Master's degree (or equivalent experience) in Microbiology, Veterinary Sciences, Molecular Biology, Bioinformatics, or a related field.
-Strong experience or interest in genomics, metagenomics, antimicrobial resistance, and sequencing technologies.
-Experience with bacterial DNA extraction, sequencing technologies (Oxford Nanopore preferred), or bioinformatics pipelines is a plus.
-Strong problem-solving skills and ability to work in a team-oriented research environment.
Position Details
1. Start Date: September 2025 (negotiable)
2. Location: University of Calgary, Faculty of Veterinary Medicine (Calgary, Alberta, Canada)
3. Application Deadline: Applications will be reviewed on a rolling basis until the position is filled.
How to Apply
To apply, please submit the following documents:
- A cover letter detailing your research interests and why you are interested in this project.
-Your CV (including relevant research experience, publications, and technical skills).
Send applications to:
Dr. Jeroen De Buck- ucvmphdrecruitment@gmail.com
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